PTBP1

Polypyrimidine tract-binding protein 1 is a protein that in humans is encoded by the PTBP1 gene.[5][6][7]

PTBP1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1QM9, 1SJQ, 1SJR, 2AD9, 2ADB, 2ADC, 2EVZ, 3ZZY, 3ZZZ
Identifiers
Aliases	PTBP1, HNRNP-I, HNRNPI, HNRPI, PTB, PTB-1, PTB-T, PTB2, PTB3, PTB4, pPTB, polypyrimidine tract binding protein 1
External IDs	OMIM: 600693 MGI: 97791 HomoloGene: 49188 GeneCards: PTBP1
Gene location (Human) Chr. Chromosome 19 (human)[1] Band 19p13.3 Start 797,075 bp[1] End 812,327 bp[1]
Gene location (Mouse) Chr. Chromosome 10 (mouse)[2] Band 10 C1|10 39.72 cM Start 79,854,427 bp[2] End 79,864,771 bp[2]
RNA expression pattern More reference expression data
Gene ontology Molecular function • pre-mRNA binding • GO:0001948 protein binding • poly-pyrimidine tract binding • nucleic acid binding • RNA binding Cellular component • nucleolus • extracellular exosome • membrane • cell nucleus • nucleoplasm Biological process • mRNA splicing, via spliceosome • mRNA processing • negative regulation of mRNA splicing, via spliceosome • regulation of alternative mRNA splicing, via spliceosome • negative regulation of RNA splicing • RNA splicing • negative regulation of muscle cell differentiation • fibroblast growth factor receptor signaling pathway • IRES-dependent viral translational initiation • RNA metabolic process • positive regulation of protein dephosphorylation • positive regulation of calcineurin-NFAT signaling cascade Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	5725	19205
Ensembl	ENSG00000011304	ENSMUSG00000006498
UniProt	P26599	P17225
RefSeq (mRNA)	NM_002819 NM_031990 NM_031991 NM_175847	NM_001077363 NM_001283013 NM_008956
RefSeq (protein)	NP_002810 NP_114367 NP_114368	n/a
Location (UCSC)	Chr 19: 0.8 – 0.81 Mb	Chr 10: 79.85 – 79.86 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA-binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has four repeats of quasi-RNA recognition motif (RRM) domains that bind RNAs. This protein binds to the intronic polypyrimidine tracts that requires pre-mRNA splicing and acts via the protein degradation ubiquitin-proteasome pathway. It may also promote the binding of U2 snRNP to pre-mRNAs. This protein is localized in the nucleoplasm and it is also detected in the perinucleolar structure. Alternatively spliced transcript variants encoding different isoforms have been described.[7]

PTBP1 In Mammals

In brains of mammals, transcripts from the PTBP1 gene are missing one exon (exon 9) that is included in the brains of other vertebrates, as a result of alternative splicing. This contributes to the evolutionary difference between the nervous system of mammals and other vertebrates.[8]

Interactions

PTBP1 has been shown to interact with HNRPK,[9] PCBP2,[9] SFPQ[10][11] and HNRNPL.[9][12]

This gene is targeted by the microRNA miR-124. During neuronal differentiation, miR-124 reduces PTBP1 levels, leading to the accumulation of correctly spliced PTBP2 mRNA and a dramatic increase in PTBP2 protein.[13]

References

1. GRCh38: Ensembl release 89: ENSG00000011304 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000006498 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Patton JG, Mayer SA, Tempst P, Nadal-Ginard B (August 1991). "Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing". Genes Dev. 5 (7): 1237–51. doi:10.1101/gad.5.7.1237. PMID 1906036.
6. Romanelli MG, Lorenzi P, Morandi C (November 2000). "Organization of the human gene encoding heterogeneous nuclear ribonucleoprotein type I (hnRNP I) and characterization of hnRNP I related pseudogene". Gene. 255 (2): 267–72. doi:10.1016/S0378-1119(00)00331-0. PMID 11024286.
7. "Entrez Gene: PTBP1 polypyrimidine tract binding protein 1".
8. Gueroussov, Serge; Gonatopoulos-Pournatzis, Thomas; Irimia, Manuel; Raj, Bushra; Lin, Zhen-Yuan; Gingras, Anne-Claude; Blencowe, Benjamin J. (August 2015). "An alternative splicing event amplifies evolutionary differences between vertebrates". Science. 349 (6250): 868–873. Bibcode:2015Sci...349..868G. doi:10.1126/science.aaa8381. hdl:10230/27120. PMID 26293963. S2CID 45304389.
9. Kim, J H; Hahm B; Kim Y K; Choi M; Jang S K (May 2000). "Protein-protein interaction among hnRNPs shuttling between nucleus and cytoplasm". J. Mol. Biol. 298 (3): 395–405. doi:10.1006/jmbi.2000.3687. ISSN 0022-2836. PMID 10772858.
10. Patton, J G; Porro E B; Galceran J; Tempst P; Nadal-Ginard B (March 1993). "Cloning and characterization of PSF, a novel pre-mRNA splicing factor". Genes Dev. 7 (3): 393–406. doi:10.1101/gad.7.3.393. ISSN 0890-9369. PMID 8449401.
11. Meissner, M; Dechat T; Gerner C; Grimm R; Foisner R; Sauermann G (January 2000). "Differential nuclear localization and nuclear matrix association of the splicing factors PSF and PTB". J. Cell. Biochem. 76 (4): 559–66. doi:10.1002/(SICI)1097-4644(20000315)76:4<559::AID-JCB4>3.0.CO;2-U. ISSN 0730-2312. PMID 10653975.
12. Hahm, B; Cho O H; Kim J E; Kim Y K; Kim J H; Oh Y L; Jang S K (April 1998). "Polypyrimidine tract-binding protein interacts with HnRNP L". FEBS Lett. 425 (3): 401–6. doi:10.1016/S0014-5793(98)00269-5. ISSN 0014-5793. PMID 9563502. S2CID 4980318.
13. Makeyev EV, Zhang J, Carrasco MA, Maniatis T (August 2007). "The MicroRNA miR-124 Promotes Neuronal Differentiation by Triggering Brain-Specific Alternative Pre-mRNA Splicing". Mol. Cell. 27 (3): 435–48. doi:10.1016/j.molcel.2007.07.015. PMC 3139456. PMID 17679093.

Further reading

• Rasmussen HH, van Damme J, Puype M, et al. (1993). "Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes". Electrophoresis. 13 (12): 960–9. doi:10.1002/elps.11501301199. PMID 1286667. S2CID 41855774.
• Ghetti A, Piñol-Roma S, Michael WM, et al. (1992). "hnRNP I, the polypyrimidine tract-binding protein: distinct nuclear localization and association with hnRNAs". Nucleic Acids Res. 20 (14): 3671–8. doi:10.1093/nar/20.14.3671. PMC 334017. PMID 1641332.
• Gil A, Sharp PA, Jamison SF, Garcia-Blanco MA (1991). "Characterization of cDNAs encoding the polypyrimidine tract-binding protein". Genes Dev. 5 (7): 1224–36. doi:10.1101/gad.5.7.1224. PMID 1906035.
• Raimondi E, Romanelli MG, Moralli D, et al. (1995). "Assignment of the human gene encoding heterogeneous nuclear RNA ribonucleoprotein I (PTB) to chromosome 14q23-q24.1". Genomics. 27 (3): 553–5. doi:10.1006/geno.1995.1093. PMID 7558043.
• Patton JG, Porro EB, Galceran J, et al. (1993). "Cloning and characterization of PSF, a novel pre-mRNA splicing factor". Genes Dev. 7 (3): 393–406. doi:10.1101/gad.7.3.393. PMID 8449401.
• Wu-Baer F, Lane WS, Gaynor RB (1996). "Identification of a group of cellular cofactors that stimulate the binding of RNA polymerase II and TRP-185 to human immunodeficiency virus 1 TAR RNA". J. Biol. Chem. 271 (8): 4201–8. doi:10.1074/jbc.271.8.4201. PMID 8626763.
• Black AC, Luo J, Chun S, et al. (1997). "Specific binding of polypyrimidine tract binding protein and hnRNP A1 to HIV-1 CRS elements". Virus Genes. 12 (3): 275–85. doi:10.1007/bf00284648. PMID 8883365. S2CID 11678179.
• Huang S, Deerinck TJ, Ellisman MH, Spector DL (1997). "The Dynamic Organization of the Perinucleolar Compartment in the Cell Nucleus". J. Cell Biol. 137 (5): 965–74. doi:10.1083/jcb.137.5.965. PMC 2136227. PMID 9166399.
• Oh YL, Hahm B, Kim YK, et al. (1998). "Determination of functional domains in polypyrimidine-tract-binding protein". Biochem. J. 331 (Pt 1): 169–75. doi:10.1042/bj3310169. PMC 1219335. PMID 9512476.
• Hahm B, Cho OH, Kim JE, et al. (1998). "Polypyrimidine tract-binding protein interacts with HnRNP L". FEBS Lett. 425 (3): 401–6. doi:10.1016/S0014-5793(98)00269-5. PMID 9563502. S2CID 4980318.
• Meissner M, Dechat T, Gerner C, et al. (2000). "Differential nuclear localization and nuclear matrix association of the splicing factors PSF and PTB". J. Cell. Biochem. 76 (4): 559–66. doi:10.1002/(SICI)1097-4644(20000315)76:4<559::AID-JCB4>3.0.CO;2-U. PMID 10653975.
• Kim JH, Hahm B, Kim YK, et al. (2000). "Protein-protein interaction among hnRNPs shuttling between nucleus and cytoplasm". J. Mol. Biol. 298 (3): 395–405. doi:10.1006/jmbi.2000.3687. PMID 10772858.
• Conte MR, Grüne T, Ghuman J, et al. (2000). "Structure of tandem RNA recognition motifs from polypyrimidine tract binding protein reveals novel features of the RRM fold". EMBO J. 19 (12): 3132–41. doi:10.1093/emboj/19.12.3132. PMC 203357. PMID 10856256.
• Markovtsov V, Nikolic JM, Goldman JA, et al. (2000). "Cooperative Assembly of an hnRNP Complex Induced by a Tissue-Specific Homolog of Polypyrimidine Tract Binding Protein". Mol. Cell. Biol. 20 (20): 7463–79. doi:10.1128/MCB.20.20.7463-7479.2000. PMC 86300. PMID 11003644.
• de Vries H, Rüegsegger U, Hübner W, et al. (2000). "Human pre-mRNA cleavage factor IIm contains homologs of yeast proteins and bridges two other cleavage factors". EMBO J. 19 (21): 5895–904. doi:10.1093/emboj/19.21.5895. PMC 305781. PMID 11060040.
• Zang WQ, Li B, Huang PY, et al. (2001). "Role of Polypyrimidine Tract Binding Protein in the Function of the Hepatitis B Virus Posttranscriptional Regulatory Element". J. Virol. 75 (22): 10779–86. doi:10.1128/JVI.75.22.10779-10786.2001. PMC 114659. PMID 11602719.
• Hüttelmaier S, Illenberger S, Grosheva I, et al. (2002). "Raver1, a dual compartment protein, is a ligand for PTB/hnRNPI and microfilament attachment proteins". J. Cell Biol. 155 (5): 775–86. doi:10.1083/jcb.200105044. PMC 2150882. PMID 11724819.
• Kamath RV, Leary DJ, Huang S (2002). "Nucleocytoplasmic Shuttling of Polypyrimidine Tract-binding Protein Is Uncoupled from RNA Export". Mol. Biol. Cell. 12 (12): 3808–20. doi:10.1091/mbc.12.12.3808. PMC 60757. PMID 11739782.