ACAT1 mRNA

Human acetyl-coA cholesterol acyltransferase (ACAT1) gene produces a chimeric mRNA through the interchromosomal processing of two discontinuous RNAs transcribed from chromosomes 1 and 7.[1] This chimeric mRNA uses AUG as a translation initiation codon to produce the normal 50-kDa ACAT1 protein but used an alternative translation initiation codon, GGC, to produce the novel enzymatically active 56-kDa isoform.

ACAT1 mRNA
Conserved secondary structure of ACAT1 mRNA
Identifiers
SymbolACAT1
RfamRF01495
Other data
GO0006446
SO0005836
PDB structuresPDBe

Mutagenesis and mass spectrometry identified the alternative initiation codon as the start codon for the novel 56-kDa protein and its location was mapped to a region located upstream of the AUG initiation codon. Three stem loop structures have been predicted to surround the GCC initiation codon and are known as SL1 to SL3. Mutations that disrupted these stem-loop structures showed that SL1 and SL2 as required for translation initiation from the GGC codon but SL3 has no effect on translation efficiency. Translation initiation from the GGC codon was shown to be is mediated by an internal ribosome entry site (IRES) which requires SL1 located upstream of the IRES and SL2 located downstream.[2] This study also showed that SL3 influences the choice of downstream AUG translation initiation codons that will produce the normal 50-KDa human ACAT1 protein.[3]

References
  1. Yang L, Lee O, Chen J, Chen J, Chang CC, Zhou P, Wang ZZ, Ma HH, Sha HF, Feng JX, Wang Y, Yang XY, Wang L, Dong R, Ornvold K, Li BL, Chang TY (October 2004). "Human acyl-coenzyme A:cholesterol acyltransferase 1 (acat1) sequences located in two different chromosomes (7 and 1) are required to produce a novel ACAT1 isoenzyme with additional sequence at the N terminus" (Free full text). The Journal of Biological Chemistry. 279 (44): 46253–62. doi:10.1074/jbc.M408155200. PMID 15319423.
  2. Chen J, Zhao XN, Yang L, Hu GJ, Lu M, Xiong Y, Yang XY, Chang CC, Song BL, Chang TY, Li BL (September 2008). "RNA secondary structures located in the interchromosomal region of human ACAT1 chimeric mRNA are required to produce the 56-kDa isoform". Cell Research. 18 (9): 921–36. doi:10.1038/cr.2008.66. PMC 3086790. PMID 18542101.
  3. Yang L, Chen J, Chang CC, Yang XY, Wang ZZ, Chang TY, Li BL (April 2004). "A stable upstream stem-loop structure enhances selection of the first 5'-ORF-AUG as a main start codon for translation initiation of human ACAT1 mRNA". Acta Biochimica et Biophysica Sinica. 36 (4): 259–68. doi:10.1093/abbs/36.4.259. PMID 15253151. Archived from the original (Free full text) on 2016-03-03.
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